☰ Navigation Tabs
Structure of the Staphylococcus aureus AgrA LytTR Domain Bound to DNA Reveals a Beta Fold with a Novel Mode of Binding
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 40% PEG 400, 0.1M Bis-Tris, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.58 52.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.938 α = 90 b = 47.938 β = 90 c = 100.112 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2006-06-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A 0.9204 NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 17.3 98.1 3.8 29714 29714 18.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.66 97.3 0.155 5.7 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.6 17.3 29714 27747 1485 98.35 0.1961 0.19659 0.19534 0.2096 0.22066 0.2311 RANDOM 19.945
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.564 r_dihedral_angle_4_deg 13.397 r_dihedral_angle_3_deg 11.461 r_dihedral_angle_1_deg 5.998 r_scangle_it 1.996 r_angle_refined_deg 1.381 r_scbond_it 1.364 r_mcangle_it 1.216 r_mcbond_it 0.768 r_xyhbond_nbd_refined 0.374
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.564 r_dihedral_angle_4_deg 13.397 r_dihedral_angle_3_deg 11.461 r_dihedral_angle_1_deg 5.998 r_scangle_it 1.996 r_angle_refined_deg 1.381 r_scbond_it 1.364 r_mcangle_it 1.216 r_mcbond_it 0.768 r_xyhbond_nbd_refined 0.374 r_nbtor_refined 0.302 r_symmetry_vdw_refined 0.222 r_nbd_refined 0.187 r_symmetry_hbond_refined 0.155 r_chiral_restr 0.073 r_metal_ion_refined 0.023 r_bond_refined_d 0.007 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 872 Nucleic Acid Atoms 650 Solvent Atoms 223 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data reduction HKL-2000 data scaling SHARP phasing