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Crystal structure of betaC-S lyase from Streptococcus anginosus in complex with L-serine: External aldimine form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 22% PEG 8000, 0.1M Hepes pH7.5, 0.08M ammonium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.27 45.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.965 α = 90 b = 111.302 β = 90 c = 217.193 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 270 2008-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0000 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.66 36.84 99.2 0.072 0.072 7.9 14.7 189945 189945
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.66 1.7 98.3 0.248 0.248 3.1 14.6 13790
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.66 36.84 179903 179903 9529 100 0.15229 0.15229 0.15097 0.1596 0.1773 0.1832 RANDOM 9.178
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.73 -0.21 -0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.545 r_dihedral_angle_4_deg 15.596 r_dihedral_angle_3_deg 11.627 r_dihedral_angle_1_deg 5.842 r_scangle_it 3.282 r_scbond_it 2.041 r_angle_refined_deg 1.318 r_mcangle_it 1.178 r_angle_other_deg 0.921 r_mcbond_it 0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.545 r_dihedral_angle_4_deg 15.596 r_dihedral_angle_3_deg 11.627 r_dihedral_angle_1_deg 5.842 r_scangle_it 3.282 r_scbond_it 2.041 r_angle_refined_deg 1.318 r_mcangle_it 1.178 r_angle_other_deg 0.921 r_mcbond_it 0.62 r_chiral_restr 0.242 r_symmetry_vdw_other 0.223 r_nbd_refined 0.213 r_symmetry_vdw_refined 0.197 r_nbd_other 0.187 r_nbtor_refined 0.18 r_mcbond_other 0.169 r_symmetry_hbond_refined 0.139 r_xyhbond_nbd_refined 0.131 r_nbtor_other 0.083 r_metal_ion_refined 0.057 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12484 Nucleic Acid Atoms Solvent Atoms 1616 Heterogen Atoms 287
Software Software Software Name Purpose SERGUI data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling