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Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (FabZ) from Plasmodium falciparum in complex with NAS91-11
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Z6B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 289 20-25% PEG 8000, 0.1M MES, 0.1-0.3M KH2PO4, 15-20% glycerol, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.27 45.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 217.05 α = 90 b = 217.05 β = 90 c = 157.33 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2009-05-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.97 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 42.45 99.9 0.191 4.8 4.9 111703 55.15
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.74 99.7 0.527 2.4 4.7 16251
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1Z6B 2.6 41.85 102137 5363 96.01 0.22784 0.22594 0.2231 0.26448 0.2606 RANDOM 43.603
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 7.38 7.38 -14.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.83 r_dihedral_angle_3_deg 18.127 r_dihedral_angle_4_deg 14.94 r_dihedral_angle_1_deg 6.302 r_scangle_it 1.316 r_angle_refined_deg 1.251 r_scbond_it 0.828 r_mcangle_it 0.764 r_mcbond_it 0.428 r_chiral_restr 0.083
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.83 r_dihedral_angle_3_deg 18.127 r_dihedral_angle_4_deg 14.94 r_dihedral_angle_1_deg 6.302 r_scangle_it 1.316 r_angle_refined_deg 1.251 r_scbond_it 0.828 r_mcangle_it 0.764 r_mcbond_it 0.428 r_chiral_restr 0.083 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 26519 Nucleic Acid Atoms Solvent Atoms 585 Heterogen Atoms 172
Software Software Software Name Purpose PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling