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GAL-3 protein with galactose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 28VP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 20%w/vPolyethyleneglycolmonomethylether5,000 200mMSodiumthiocyanate
Crystal Properties Matthews coefficient Solvent content 2.11 41.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.122 α = 90 b = 58.217 β = 90 c = 62.643 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 16M 2026-09-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91840 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.03 42.64 95.6 0.04 0.048 0.026 1 19 5.8 64793
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.03 1.05 64.4 0.475 0.641 0.427 0.732 1.7 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.03 42.64 64725 3347 95.436 0.172 0.171 0.171 0.1827 0.1829 RANDOM 11.902
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.584 -0.307 -0.277
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.169 r_dihedral_angle_3_deg 11.336 r_dihedral_angle_1_deg 7.756 r_dihedral_angle_2_deg 5.788 r_lrange_it 5.022 r_scangle_it 2.756 r_scbond_it 1.95 r_angle_refined_deg 1.803 r_mcangle_it 1.212 r_mcbond_it 0.901
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.169 r_dihedral_angle_3_deg 11.336 r_dihedral_angle_1_deg 7.756 r_dihedral_angle_2_deg 5.788 r_lrange_it 5.022 r_scangle_it 2.756 r_scbond_it 1.95 r_angle_refined_deg 1.803 r_mcangle_it 1.212 r_mcbond_it 0.901 r_symmetry_nbd_refined 0.347 r_nbtor_refined 0.312 r_symmetry_xyhbond_nbd_refined 0.244 r_xyhbond_nbd_refined 0.201 r_nbd_refined 0.2 r_chiral_restr 0.116 r_bond_refined_d 0.012 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1116 Nucleic Acid Atoms Solvent Atoms 225 Heterogen Atoms 12
Software Software Software Name Purpose Aimless data scaling gemmi data extraction REFMAC refinement XDS data reduction PHASER phasing