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Cytochrome P450 Reductases in complex with NADPH from Candida albicans
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6T1U
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289 0.2 M calcium chloride dihydrate, 20 % w/v polyethylene glycol 3350
Crystal Properties Matthews coefficient Solvent content 2.11 41.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.568 α = 90 b = 106 β = 90 c = 116.789 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS EIGER2 XE 16M 2022-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9537 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 78.61 100 0.282 1 8.7 13.7 70690
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.19 0.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.15 78.61 67165 3525 99.31 0.20594 0.2034 0.2121 0.25249 0.2525 RANDOM 53.127
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.05 -0.57 1.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.336 r_dihedral_angle_2_deg 11.767 r_long_range_B_other 9.373 r_long_range_B_refined 9.368 r_dihedral_angle_1_deg 7.801 r_scangle_other 7.033 r_mcangle_it 5.889 r_mcangle_other 5.889 r_scbond_it 4.66 r_scbond_other 4.659
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.336 r_dihedral_angle_2_deg 11.767 r_long_range_B_other 9.373 r_long_range_B_refined 9.368 r_dihedral_angle_1_deg 7.801 r_scangle_other 7.033 r_mcangle_it 5.889 r_mcangle_other 5.889 r_scbond_it 4.66 r_scbond_other 4.659 r_mcbond_it 4.01 r_mcbond_other 4.01 r_angle_refined_deg 2.339 r_angle_other_deg 0.783 r_chiral_restr 0.11 r_bond_refined_d 0.012 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10025 Nucleic Acid Atoms Solvent Atoms 185 Heterogen Atoms 254
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction PHASER phasing PDB_EXTRACT data extraction