X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2ZX0PDB ENTRY 2ZX0

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.929115% PEG8000, 50mM potassium phosphate, pH4.9, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.3146.69

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 56.861α = 90
b = 74.914β = 90
c = 93.355γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMAC Science DIP-2030mirrors2008-10-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEMACSCIENCE1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.7890.60.07718.7111131006811
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.72.7977.10.1787838

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2ZX02.7895804841000.195130.19180.26018RANDOM20.905
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.13-0.81-1.32
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.198
r_dihedral_angle_3_deg11.025
r_dihedral_angle_4_deg10.099
r_dihedral_angle_1_deg2.96
r_scangle_it1.69
r_angle_refined_deg1.56
r_scbond_it1.053
r_mcangle_it0.751
r_mcbond_it0.423
r_nbtor_refined0.309
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.198
r_dihedral_angle_3_deg11.025
r_dihedral_angle_4_deg10.099
r_dihedral_angle_1_deg2.96
r_scangle_it1.69
r_angle_refined_deg1.56
r_scbond_it1.053
r_mcangle_it0.751
r_mcbond_it0.423
r_nbtor_refined0.309
r_symmetry_vdw_refined0.218
r_nbd_refined0.21
r_symmetry_hbond_refined0.194
r_xyhbond_nbd_refined0.153
r_chiral_restr0.094
r_bond_refined_d0.01
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3000
Nucleic Acid Atoms
Solvent Atoms33
Heterogen Atoms122

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
DENZOdata reduction
HKL-2000data scaling
MOLREPphasing