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tBclA, a recombinant spore surface protein from Bacillus anthracis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WCK PDB ID 1WCK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 0.1M MES (pH 6.5), 17.5% EtOH, 5% PEG 400, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 4.05 69.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.144 α = 90 b = 68.144 β = 90 c = 163.178 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 138 CCD ADSC QUANTUM 4 2006-06-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A 0.96426 Photon Factory BL-6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 81.65 0.035 74.9 33 43616 43616 1 1 16.86
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.38 0.85 1.1 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ID 1WCK 1.35 47.82 43616 43616 2347 91.53 0.17485 0.17402 0.19107 RANDOM 17.94
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.77 0.39 0.77 -1.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.44 r_dihedral_angle_3_deg 11.114 r_dihedral_angle_1_deg 6.526 r_scangle_it 2.834 r_scbond_it 1.764 r_mcangle_it 1.442 r_angle_refined_deg 1.407 r_mcbond_it 0.884 r_nbtor_refined 0.303 r_nbd_refined 0.205
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.44 r_dihedral_angle_3_deg 11.114 r_dihedral_angle_1_deg 6.526 r_scangle_it 2.834 r_scbond_it 1.764 r_mcangle_it 1.442 r_angle_refined_deg 1.407 r_mcbond_it 0.884 r_nbtor_refined 0.303 r_nbd_refined 0.205 r_symmetry_hbond_refined 0.18 r_symmetry_vdw_refined 0.143 r_xyhbond_nbd_refined 0.139 r_chiral_restr 0.098 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 953 Nucleic Acid Atoms Solvent Atoms 195 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing