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Structure of the human LINE-1 ORF1p trimer
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WPQ PDB ENTRIES 2WPQ AND 2W7A experimental model PDB 2W7A PDB ENTRIES 2WPQ AND 2W7A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 100 MM NA-HEPES PH7.0, 1.1 M NA-MALONATE
Crystal Properties Matthews coefficient Solvent content 2.5 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.69 α = 90 b = 85.42 β = 90 c = 111.45 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD MARRESEARCH MIRRORS 2009-06-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.971000, 0.979868 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 36.8 97.2 0.049 10.9 2.3 40087 -3 36.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 97.6 0.49 2 2.3
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD PDB ENTRIES 2WPQ AND 2W7A 2.1 36.824 2 40085 2013 97.27 0.2109 0.2081 0.2073 0.2639 0.263 52.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.767 0.8396 -1.6066
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 14.522 f_angle_d 1.273 f_chiral_restr 0.073 f_bond_d 0.012 f_plane_restr 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4951 Nucleic Acid Atoms Solvent Atoms 190 Heterogen Atoms 2
Software Software Software Name Purpose XDS data reduction XSCALE data scaling SHELX phasing PHASER phasing PHENIX refinement