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CRYSTAL STRUCTURE OF THE MYOMESIN DOMAINS MY9-MY11
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2R15 MYOMESIN DOMAINS MY10-MY11, PDB ENTRY 2R15
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 0.18M MAGNESIUM ACETATE 20% W/V POLYETHYLENE GLYCOL 3350, pH 7.5
Crystal Properties Matthews coefficient Solvent content 3.11 60.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.471 α = 90 b = 41.487 β = 88.39 c = 84.862 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 EMBL/DESY, HAMBURG X12
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.49 25 99 0.11 10.6 3.3 15174 -3 58.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.49 2.53 89.6 0.52 1.8 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT MYOMESIN DOMAINS MY10-MY11, PDB ENTRY 2R15 2.5 25 14571 465 100 0.21127 0.20934 0.2102 0.271 0.2726 RANDOM 59.363
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.51 -2.33 -3.1 4.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.532 r_dihedral_angle_4_deg 25.588 r_dihedral_angle_3_deg 21.517 r_dihedral_angle_1_deg 7.198 r_scangle_it 2.621 r_scbond_it 1.633 r_angle_refined_deg 1.577 r_mcangle_it 1.071 r_mcbond_it 0.667 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.532 r_dihedral_angle_4_deg 25.588 r_dihedral_angle_3_deg 21.517 r_dihedral_angle_1_deg 7.198 r_scangle_it 2.621 r_scbond_it 1.633 r_angle_refined_deg 1.577 r_mcangle_it 1.071 r_mcbond_it 0.667 r_nbtor_refined 0.306 r_nbd_refined 0.253 r_symmetry_vdw_refined 0.233 r_symmetry_hbond_refined 0.191 r_xyhbond_nbd_refined 0.176 r_chiral_restr 0.094 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2443 Nucleic Acid Atoms Solvent Atoms 182 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing