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Structure of the N-terminal four domains of the complement regulator Rat Crry
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OK9 DOMAINS FROM PDB ENTRIES 1OK9 AND 1GKN experimental model PDB 1GKN DOMAINS FROM PDB ENTRIES 1OK9 AND 1GKN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 0.2 M AMMONIUM SULPHATE, 0.1 M SODIUM ACETATE PH 4.6, 30% W/V PEGMME 2000.
Crystal Properties Matthews coefficient Solvent content 3.1 60.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 21.77 α = 90 b = 105.339 β = 90 c = 152.281 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD ADSC CCD 2010-07-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 30 99.8 0.12 12.8 6.6 13105 45.42
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.41 2.47 97.9 0.64 2.5 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT DOMAINS FROM PDB ENTRIES 1OK9 AND 1GKN 2.5 29.26 13030 651 99.95 0.1872 0.1847 0.1886 0.237 0.2543 RANDOM 32.65
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 8.8592 -3.8529 -5.0063
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 18.73 t_omega_torsion 3.01 t_angle_deg 1.17 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 18.73 t_omega_torsion 3.01 t_angle_deg 1.17 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1966 Nucleic Acid Atoms Solvent Atoms 125 Heterogen Atoms 67
Software Software Software Name Purpose BUSTER refinement xia2 data reduction SCALA data scaling PHASER phasing