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BtGH84 in complex with 6-acetamido-6-deoxy-castanospermine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CHO PDB ENTRY 2CHO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.3M NH4AC, 0.1M MES PH6.0, 13% PEG3350(W/V),10% GLYCEROL
Crystal Properties Matthews coefficient Solvent content 2.8 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.493 α = 104.13 b = 93.981 β = 93.88 c = 98.815 γ = 103.13
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2010-05-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 97.6 0.05 15.4 2.4 114491 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 96.8 0.45 2 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2CHO 2 47.5 108834 5654 97.51 0.2047 0.20288 0.209 0.23914 0.2457 RANDOM 44.289
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.38 -1.08 -1.16 0.61 -3.42 -0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.874 r_dihedral_angle_4_deg 18.158 r_dihedral_angle_3_deg 15.281 r_dihedral_angle_1_deg 6.507 r_scangle_it 3.355 r_scbond_it 2.325 r_angle_refined_deg 1.587 r_mcangle_it 1.289 r_mcbond_it 0.806 r_chiral_restr 0.107
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.874 r_dihedral_angle_4_deg 18.158 r_dihedral_angle_3_deg 15.281 r_dihedral_angle_1_deg 6.507 r_scangle_it 3.355 r_scbond_it 2.325 r_angle_refined_deg 1.587 r_mcangle_it 1.289 r_mcbond_it 0.806 r_chiral_restr 0.107 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10310 Nucleic Acid Atoms Solvent Atoms 392 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement DENZO data reduction DENZO data scaling PHASER phasing