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Crystal Structure of SSo6206 from Sulfolobus solfataricus P2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2RAQ PDB ENTRY 2RAQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.75 CRYSTALLIZATION CONDITIONS ARE REPORTED IN MCEWAN ET AL.(2006)OVEREXPRESSION, PURIFICATION, CRYSTALLIZATION AND DATA COLLECTION OF SULFOLOBUS SOLFATARICUS SSO6206, A NOVEL HIGHLY CONSERVED PROTEIN. ACTA CRYSTALLOGRAPHICA SECTION F. F62, 228-230, PH 7.75
Crystal Properties Matthews coefficient Solvent content 2.7 55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 151.09 α = 90 b = 82.98 β = 109.7 c = 69.86 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD MIRRORS 2008-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 29.6 100 0.08 12.8 5 21244
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.77 100 0.51 3.7 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2RAQ 2.7 29.63 21244 1155 100 0.22734 0.2262 0.2229 0.24731 0.2419 RANDOM 21.734
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 0.25 -0.48 0.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.202 r_dihedral_angle_4_deg 19.764 r_dihedral_angle_3_deg 13.08 r_dihedral_angle_1_deg 5.914 r_scangle_it 1.675 r_angle_refined_deg 1.124 r_scbond_it 0.981 r_angle_other_deg 0.805 r_mcangle_it 0.454 r_mcbond_it 0.228
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.202 r_dihedral_angle_4_deg 19.764 r_dihedral_angle_3_deg 13.08 r_dihedral_angle_1_deg 5.914 r_scangle_it 1.675 r_angle_refined_deg 1.124 r_scbond_it 0.981 r_angle_other_deg 0.805 r_mcangle_it 0.454 r_mcbond_it 0.228 r_mcbond_other 0.068 r_chiral_restr 0.065 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5462 Nucleic Acid Atoms Solvent Atoms 11 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing