☰ Navigation Tabs
High-resolution structure of the rotor ring from a proton dependent ATP synthase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1YCE PDB ENTRY 1YCE
Crystallization Crystal Properties Matthews coefficient Solvent content 3.41 68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.36 α = 90 b = 93.36 β = 90 c = 257.4 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2008-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.13 20 99.2 0.15 9.6 4.7 37848 1.74 26.49
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.13 20 96.7 0.99 1.7 4.3
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1YCE 2.13 45.931 1.99 37792 1892 99.09 0.1984 0.1965 0.1959 0.2349 0.2361
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.485 1.485 -13.9754
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 20.724 f_angle_d 0.944 f_chiral_restr 0.053 f_bond_d 0.006 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2885 Nucleic Acid Atoms Solvent Atoms 126 Heterogen Atoms 375
Software Software Software Name Purpose PHENIX refinement XDS data reduction XSCALE data scaling PHASER phasing