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Structure of family X DNA polymerase from Deinococcus radiodurans
Crystallization Crystal Properties Matthews coefficient Solvent content 2.34 46.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.93 α = 90 b = 138.25 β = 92.25 c = 67.75 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.46 10 95.4 0.07 13 4.2 155376 2 35.59
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.46 2.5 77.7 0.35 3 3.2
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD NONE 2.46 45.32 1.56 72673 3635 94.2 0.206 0.203 0.1944 0.249 0.2427
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -6.4619 3.8268 8.0698 -1.6078
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 18.299 f_angle_d 0.813 f_chiral_restr 0.066 f_bond_d 0.004 f_plane_restr 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8340 Nucleic Acid Atoms Solvent Atoms 77 Heterogen Atoms 9
Software Software Software Name Purpose PHENIX refinement PHENIX phasing