2W9M
Structure of family X DNA polymerase from Deinococcus radiodurans
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | HHH_5 | e2w9mA2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_5 | ECOD (1.6) |
A | HHH_8 | e2w9mA4 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_8 | ECOD (1.6) |
A | DNA_pol_B_palm | e2w9mA1 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: DNA_pol_B_palm | ECOD (1.6) |
A | PHP | e2w9mA3 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PHP | ECOD (1.6) |
B | HHH_5 | e2w9mB1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_5 | ECOD (1.6) |
B | HHH_8 | e2w9mB3 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_8 | ECOD (1.6) |
B | DNA_pol_B_palm | e2w9mB4 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: DNA_pol_B_palm | ECOD (1.6) |
B | PHP | e2w9mB2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PHP | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.150.110 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
A | 1.10.150.20 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
A | 3.30.460.10 | Alpha Beta | 2-Layer Sandwich | Beta Polymerase | domain 2 | CATH (4.3.0) |
A | 3.30.210.10 | Alpha Beta | 2-Layer Sandwich | Beta Polymerase | domain 3 | CATH (4.3.0) |
A | 3.20.20.140 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Metal-dependent hydrolases | CATH (4.3.0) |
B | 1.10.150.110 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
B | 1.10.150.20 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
B | 3.30.460.10 | Alpha Beta | 2-Layer Sandwich | Beta Polymerase | domain 2 | CATH (4.3.0) |
B | 3.30.210.10 | Alpha Beta | 2-Layer Sandwich | Beta Polymerase | domain 3 | CATH (4.3.0) |
B | 3.20.20.140 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Metal-dependent hydrolases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF14716 | Helix-hairpin-helix domain (HHH_8) | Helix-hairpin-helix domain | - | Domain | |
PF14791 | DNA polymerase beta thumb (DNA_pol_B_thumb) | DNA polymerase beta thumb | - | Family | |
PF14520 | Helix-hairpin-helix domain (HHH_5) | Helix-hairpin-helix domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR050243 | Probable phosphatase PHP | Family | |
IPR037160 | DNA polymerase, thumb domain superfamily | Homologous Superfamily | |
IPR010996 | DNA polymerase beta-like, N-terminal domain | Domain | |
IPR029398 | DNA polymerase beta, thumb domain | Domain | |
IPR016195 | Polymerase/histidinol phosphatase-like | Homologous Superfamily | |
IPR022311 | DNA polymerase/3'-5' exonuclease PolX-like | Family | |
IPR047967 | PolX, PHP domain | Domain | |
IPR043519 | Nucleotidyltransferase superfamily | Homologous Superfamily | |
IPR027421 | DNA polymerase lambda lyase domain superfamily | Homologous Superfamily | |
IPR003141 | Polymerase/histidinol phosphatase, N-terminal | Domain | |
IPR003583 | Helix-hairpin-helix DNA-binding motif, class 1 | Domain | |
IPR002054 | DNA-directed DNA polymerase X | Domain |