☰ Navigation Tabs
Chloro complex of the Ni-Form of E.coli deformylase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2A18 PDB ENTRY 2A18
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4 293 20.5% PEG4000, 100MM NAOAC PH 4.0, 293 K
Crystal Properties Matthews coefficient Solvent content 2.14 42.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.08 α = 90 b = 35.98 β = 113.43 c = 67.59 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD RIGAKU CCD OSMIC MULTILAYER 2008-04-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.69 40 94.2 0.05 18 4.29 19326 28
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.69 1.75 56.5 0.28 1.8 1.74
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2A18 1.69 62.02 17518 1969 94.65 0.21594 0.21279 0.2256 0.24322 0.2598 RANDOM 18.88
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.48 1.05 -1.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.767 r_dihedral_angle_4_deg 18.596 r_dihedral_angle_3_deg 12.734 r_dihedral_angle_1_deg 5.3 r_scangle_it 2.816 r_scbond_it 1.564 r_angle_refined_deg 1.078 r_mcangle_it 0.787 r_mcbond_it 0.389 r_chiral_restr 0.073
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.767 r_dihedral_angle_4_deg 18.596 r_dihedral_angle_3_deg 12.734 r_dihedral_angle_1_deg 5.3 r_scangle_it 2.816 r_scbond_it 1.564 r_angle_refined_deg 1.078 r_mcangle_it 0.787 r_mcbond_it 0.389 r_chiral_restr 0.073 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1340 Nucleic Acid Atoms Solvent Atoms 176 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling PHASER phasing