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Structure of avian reovirus sigmaC117-326, C2 crystal form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BSF PDB ENTRY 2BSF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.4 0.6-0.75 M AMMONIUM SULPHATE, 0.1 M TRIS-HCL PH 8.4, 25% GLYCEROL, 50 MM ZINC SULPHATE.
Crystal Properties Matthews coefficient Solvent content 3.4 64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 142.789 α = 90 b = 54.008 β = 101.79 c = 121.336 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD RD COATED FLAT AND TOROIDAL MIRRORS 2007-10-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM16 ESRF BM16
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 20 99.2 0.06 18.1 3.3 90954 21.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.81 99.2 0.38 2.8 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BSF 1.75 18.43 89213 1738 100 0.18 0.18 0.1804 0.218 0.2188 THIN SHELLS 27.73
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.89 -0.43 0.24 -2.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.623 r_dihedral_angle_4_deg 14.392 r_dihedral_angle_3_deg 11.437 r_scangle_it 7.967 r_dihedral_angle_1_deg 6.21 r_scbond_it 5.727 r_mcangle_it 4.16 r_mcbond_it 3.049 r_angle_refined_deg 1.566 r_nbtor_refined 0.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.623 r_dihedral_angle_4_deg 14.392 r_dihedral_angle_3_deg 11.437 r_scangle_it 7.967 r_dihedral_angle_1_deg 6.21 r_scbond_it 5.727 r_mcangle_it 4.16 r_mcbond_it 3.049 r_angle_refined_deg 1.566 r_nbtor_refined 0.295 r_symmetry_vdw_refined 0.205 r_nbd_refined 0.191 r_symmetry_hbond_refined 0.185 r_xyhbond_nbd_refined 0.161 r_chiral_restr 0.114 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4646 Nucleic Acid Atoms Solvent Atoms 975 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing