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Structure of the P pilus usher (PapC) translocation pore
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 5-20 % 3-METHYL-1,5-PENTANEDIOL (MPD), 6-12 % POLYETHYLENE GLYCOL 4000 (PEG4000), 50 MM NA CITRATE PH 5.6, 100 MM AMMONIUM SULFATE
Crystal Properties Matthews coefficient Solvent content 3.5 61.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 166.5 α = 90 b = 101.9 β = 128.2 c = 113.7 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2007-07-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 20 98.4 0.1 9.7 3.7 48050 -3 67.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.4 99.3 0.22 5.5 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 3.2 15 47937 2410 99.9 0.2593 0.2593 0.2644 0.2958 0.3001 RANDOM 50.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 7.369 19.591 -6.277 -1.092
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 29.1 c_scangle_it 3.66 c_mcangle_it 2.7 c_scbond_it 2.59 c_angle_deg 1.73555 c_improper_angle_d 1.57 c_mcbond_it 1.49 c_bond_d 0.016733 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 29.1 c_scangle_it 3.66 c_mcangle_it 2.7 c_scbond_it 2.59 c_angle_deg 1.73555 c_improper_angle_d 1.57 c_mcbond_it 1.49 c_bond_d 0.016733 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7517 Nucleic Acid Atoms Solvent Atoms 34 Heterogen Atoms 74
Software Software Software Name Purpose CNS refinement XDS data reduction XSCALE data scaling SHARP phasing