☰ Navigation Tabs
Crystal structure of restriction endonuclease BpuJI recognition domain in complex with cognate DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.6 0.2 M AMMONIUM TARTRATE, 20% PEG3350, pH 6.6
Crystal Properties Matthews coefficient Solvent content 2.5 55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.292 α = 90 b = 167.513 β = 90 c = 43.846 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-11-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 EMBL/DESY, HAMBURG X12
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 55.99 98 0.08 4.7 10.8 101561 2.3 13.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.37 98.2 0.31 2.3 8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.3 83.62 91374 10116 97.5 0.14 0.138 0.1519 0.166 RANDOM 13.91
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.48 -1.99 -1.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.14 r_dihedral_angle_4_deg 19.495 r_dihedral_angle_3_deg 13.589 r_scangle_it 6.777 r_dihedral_angle_1_deg 6.505 r_scbond_it 5.414 r_mcangle_it 3.951 r_mcbond_it 3.119 r_angle_refined_deg 1.099 r_angle_other_deg 0.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.14 r_dihedral_angle_4_deg 19.495 r_dihedral_angle_3_deg 13.589 r_scangle_it 6.777 r_dihedral_angle_1_deg 6.505 r_scbond_it 5.414 r_mcangle_it 3.951 r_mcbond_it 3.119 r_angle_refined_deg 1.099 r_angle_other_deg 0.78 r_symmetry_vdw_refined 0.258 r_symmetry_vdw_other 0.245 r_nbd_refined 0.229 r_nbd_other 0.225 r_nbtor_refined 0.201 r_xyhbond_nbd_refined 0.165 r_symmetry_hbond_refined 0.145 r_nbtor_other 0.09 r_chiral_restr 0.073 r_bond_refined_d 0.014 r_gen_planes_refined 0.01 r_gen_planes_other 0.001 r_bond_other_d r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2289 Nucleic Acid Atoms 486 Solvent Atoms 461 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MLPHARE phasing