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Tailspike protein of bacteriophage Sf6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 VAPOR DIFFUSION HANGING DROP 20 DEG CELSIUS DROP: 3 UL RESERVOIR SNF 3 UL PROTEIN RESERVOIR: 0.1 M MES PH 6.5, 25% PEG 8000, 20 MM MNCL2 PROTEIN: 5MG/ML IN 10 MM SODIUM PHOSPHATE PH 7 CRYOCONDITION: 0.1 M MES PH 6.5, 25 % PEG 8000, 20 MM MNCL2
Crystal Properties Matthews coefficient Solvent content 2.53 51.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.91 α = 90 b = 95.91 β = 90 c = 182.6 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC CCD TOROIDAL MIRROR M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 19.5 95.6 0.05 11.1 2.2 39829
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.98 2.06 65.4 0.08 8 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.98 19.5 39829 2101 95.7 0.119 0.117 0.1361 0.149 0.1591 RANDOM 12.19
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.012 r_scangle_it 3.297 r_scbond_it 2.103 r_angle_refined_deg 1.433 r_mcangle_it 1.239 r_angle_other_deg 0.835 r_mcbond_it 0.694 r_symmetry_vdw_other 0.317 r_nbd_other 0.259 r_symmetry_vdw_refined 0.233
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.012 r_scangle_it 3.297 r_scbond_it 2.103 r_angle_refined_deg 1.433 r_mcangle_it 1.239 r_angle_other_deg 0.835 r_mcbond_it 0.694 r_symmetry_vdw_other 0.317 r_nbd_other 0.259 r_symmetry_vdw_refined 0.233 r_nbd_refined 0.192 r_symmetry_hbond_refined 0.18 r_xyhbond_nbd_refined 0.142 r_chiral_restr 0.093 r_nbtor_other 0.082 r_bond_refined_d 0.015 r_gen_planes_other 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3825 Nucleic Acid Atoms Solvent Atoms 627 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling SOLVE phasing