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Solution structure of the N-terminal extracellular domain of human T- cadherin
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
HNCA
5% H2O/ 95% D2O OR 100% D2O
10 mM
7.8
1.0 atm
298.0
2
HNCACB
5% H2O/ 95% D2O OR 100% D2O
10 mM
7.8
1.0 atm
298.0
3
CBCACONH
5% H2O/ 95% D2O OR 100% D2O
4
HCCH-TOCSY
5% H2O/ 95% D2O OR 100% D2O
5
HNCO
5% H2O/ 95% D2O OR 100% D2O
6
15N- AND 13C-EDITED NOESY
5% H2O/ 95% D2O OR 100% D2O
7
HNCA
5% H2O/ 95% D2O OR 100% D2O
8
HNCACB
5% H2O/ 95% D2O OR 100% D2O
9
CBCACONH
5% H2O/ 95% D2O OR 100% D2O
10
HCCH- TOCSY
5% H2O/ 95% D2O OR 100% D2O
11
HNCO
5% H2O/ 95% D2O OR 100% D2O
12
15N-
5% H2O/ 95% D2O OR 100% D2O
13
13C- EDITED NOESY
5% H2O/ 95% D2O OR 100% D2O
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
DRX
800
2
Bruker
DRX
600
NMR Refinement
Method
Details
Software
X-PLOR-NIH
REFINEMENT DETAILS CAN BE FOUND UNDER EXPERIMENTAL DETAILS AND IN THE JRNL CITATION ABOVE.
Xplor-NIH
NMR Ensemble Information
Conformer Selection Criteria
LOWEST ENERGY
Conformers Calculated Total Number
200
Conformers Submitted Total Number
20
Representative Model
1 (n/a)
Additional NMR Experimental Information
Details
ASSIGNMENTS AND STRUCTURAL DATA WERE OBTAINED USING MULTDIMENSIONAL, MULTINUCLEAR NMR DATA OF 15N, 13C LABELED HUMAN T-CADHERIN 1-105. THE STRUCTURES WERE CALCULATED BY TORSION ANGLE DYNAMICS FOLLOWED BY MOLECULAR DYNAMICS IN CARTESIAN SPACE. THE FINAL 20 STRUCTURES WERE FURTHER REFINED IN A WATER-SHELL.