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Crystal structure of the GluR2-flip ligand binding domain, r/g unedited.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FTJ PDB ENTRY 1FTJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.1M SODIUM CACODYLATE PH 6.5 0.1M ZINC ACETATE 14% PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.47 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.254 α = 90 b = 164.003 β = 90 c = 47.462 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS 2004-12-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.36 29.22 95.6 0.09 13.3 3.8 35867 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.36 2.49 81.8 0.33 3.8 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1FTJ 2.38 28.56 34055 1789 97.2 0.179 0.174 0.174 0.265 0.2635 RANDOM 18.41
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.112 r_dihedral_angle_4_deg 22.394 r_dihedral_angle_3_deg 17.709 r_dihedral_angle_1_deg 6.971 r_scangle_it 4.288 r_scbond_it 2.888 r_angle_refined_deg 2.04 r_mcangle_it 1.746 r_mcbond_it 1.082 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.112 r_dihedral_angle_4_deg 22.394 r_dihedral_angle_3_deg 17.709 r_dihedral_angle_1_deg 6.971 r_scangle_it 4.288 r_scbond_it 2.888 r_angle_refined_deg 2.04 r_mcangle_it 1.746 r_mcbond_it 1.082 r_nbtor_refined 0.303 r_symmetry_hbond_refined 0.284 r_symmetry_vdw_refined 0.241 r_nbd_refined 0.222 r_xyhbond_nbd_refined 0.202 r_chiral_restr 0.135 r_bond_refined_d 0.023 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6044 Nucleic Acid Atoms Solvent Atoms 415 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing