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Structure of the tryptase inhibitor TdPI from a tick
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 2.4 M AMMONIUM SULFATE 0.1 M TRIS-HCL, PH 8 20% MPD
Crystal Properties Matthews coefficient Solvent content 1.58 35.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.676 α = 90 b = 28.594 β = 90 c = 30.11 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 20 91 0.03 21 8.8 10942 1.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.5 72 0.62 1.6 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.4 19.57 8454 451 96.8 0.171 0.168 0.1797 0.224 0.2265 RANDOM 13.35
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.47 -0.05 0.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.288 r_dihedral_angle_3_deg 12.756 r_dihedral_angle_4_deg 10.337 r_dihedral_angle_1_deg 6.58 r_scangle_it 3.898 r_scbond_it 3.568 r_mcangle_it 2.611 r_mcbond_it 2.124 r_angle_refined_deg 1.671 r_angle_other_deg 0.947
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.288 r_dihedral_angle_3_deg 12.756 r_dihedral_angle_4_deg 10.337 r_dihedral_angle_1_deg 6.58 r_scangle_it 3.898 r_scbond_it 3.568 r_mcangle_it 2.611 r_mcbond_it 2.124 r_angle_refined_deg 1.671 r_angle_other_deg 0.947 r_symmetry_vdw_refined 0.273 r_symmetry_vdw_other 0.263 r_nbd_refined 0.232 r_nbtor_refined 0.199 r_nbd_other 0.197 r_symmetry_hbond_refined 0.159 r_xyhbond_nbd_refined 0.158 r_chiral_restr 0.096 r_nbtor_other 0.082 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 415 Nucleic Acid Atoms Solvent Atoms 78 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SHELX phasing