Experiment: 2TOD

ORNITHINE DECARBOXYLASE FROM TRYPANOSOMA BRUCEI K69A MUTANT IN COMPLEX WITH ALPHA-DIFLUOROMETHYLORNITHINE

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	7ODC	PDB ENTRY 7ODC

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1		7		16% PEG 3350, 0.2 M SOLIUM ACETATE, 100MM HEPES PH 7.5, 20MG/ML PROTEIN DILUTED TWICE, 16C, pH 7.0

Crystal Properties
Matthews coefficient	Solvent content
2	32

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 66.8	α = 90
b = 154.5	β = 90.58
c = 77.1	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	90					M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	CHESS BEAMLINE A1		CHESS	A1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2	40	97.6	0.09	13.9	3.3		103282

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Cut-off Sigma (F)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Work (Depositor)	R-Free (Depositor)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB ENTRY 7ODC	2	8	1	101011		96.2	0.212	0.27

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	11009
Nucleic Acid Atoms
Solvent Atoms	869
Heterogen Atoms	88

Software

Software
Software Name	Purpose
AMoRE	phasing
REFMAC	refinement
X-PLOR	refinement
CNS	refinement
DENZO	data reduction
SCALEPACK	data scaling