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Crystal structure of 3-HSA hydroxylase from Rhodococcus sp. RHA1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 289 0.2M NaCl, 0.1M Hepes pH 7.5, 25% PEG 3350, 0.3M PPS, 2mM L-Cysteine, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.49 50.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.283 α = 83.78 b = 76.137 β = 75.95 c = 80.881 γ = 89.99
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-02-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97926 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 50 97.3 0.088 24.75 4.4 202431 196906 -3 15.852
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 95 0.334 3.31 3.5 19163
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.65 50 186903 186903 9923 97.21 0.14741 0.14741 0.14615 0.17127 0.1804 RANDOM 13.541
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.3 -0.13 0.24 -0.38 0.09 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.462 r_dihedral_angle_4_deg 16.552 r_dihedral_angle_3_deg 12.18 r_dihedral_angle_1_deg 4.963 r_scangle_it 3.037 r_scbond_it 2.01 r_angle_refined_deg 1.272 r_mcangle_it 1.06 r_mcbond_it 0.754 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.462 r_dihedral_angle_4_deg 16.552 r_dihedral_angle_3_deg 12.18 r_dihedral_angle_1_deg 4.963 r_scangle_it 3.037 r_scbond_it 2.01 r_angle_refined_deg 1.272 r_mcangle_it 1.06 r_mcbond_it 0.754 r_nbtor_refined 0.309 r_symmetry_vdw_refined 0.236 r_nbd_refined 0.204 r_xyhbond_nbd_refined 0.144 r_symmetry_hbond_refined 0.117 r_chiral_restr 0.085 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11824 Nucleic Acid Atoms Solvent Atoms 1798 Heterogen Atoms 156
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing