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Crystal Structure of BclA-island Construct
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WCK BclA(PDB ID: 1WCK)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295 di-Sodium tartrate, vapor diffusion, sitting drop, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.95 68.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.496 α = 90 b = 67.496 β = 90 c = 163.933 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MarUSA MarMosaic -325 2007-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.43 50 98.9 0.049 14.3 19.4 41307
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.43 1.48 91.6 0.428 10.4 3722
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT BclA(PDB ID: 1WCK) 1.43 50 41256 2086 98.88 0.13 0.13 0.1439 0.147 0.158 RANDOM 15.28
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.64 0.32 0.64 -0.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.634 r_sphericity_free 10.528 r_dihedral_angle_3_deg 9.773 r_dihedral_angle_1_deg 6.567 r_sphericity_bonded 5.705 r_scangle_it 5.613 r_scbond_it 4.586 r_mcangle_it 3.56 r_mcbond_it 2.85 r_rigid_bond_restr 2.812
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.634 r_sphericity_free 10.528 r_dihedral_angle_3_deg 9.773 r_dihedral_angle_1_deg 6.567 r_sphericity_bonded 5.705 r_scangle_it 5.613 r_scbond_it 4.586 r_mcangle_it 3.56 r_mcbond_it 2.85 r_rigid_bond_restr 2.812 r_angle_refined_deg 1.652 r_mcbond_other 1.458 r_angle_other_deg 0.96 r_nbd_other 0.196 r_xyhbond_nbd_refined 0.185 r_nbd_refined 0.182 r_symmetry_vdw_refined 0.171 r_nbtor_refined 0.165 r_symmetry_vdw_other 0.122 r_symmetry_hbond_refined 0.122 r_chiral_restr 0.111 r_nbtor_other 0.093 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1021 Nucleic Acid Atoms Solvent Atoms 168 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction