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Crystal Structure of Bacillus stearothermophilus UvrA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 295 13%PEG2000MME, 50 mM Na-HEPES pH 7.0, 500 mM NaCl, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.76 55.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.713 α = 90 b = 94.72 β = 108.8 c = 130.481 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M MAD 2 1 x-ray 100 M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.97925, 0.97941, 0.96403 APS 24-ID-C 2 SYNCHROTRON APS BEAMLINE 24-ID-C 1.28281 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 3.2 50 98.3 0.079 13.4 6.9 38657
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 3.2 3.31 85.9 0.305 4.9 3362
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 3.2 50 34862 3880 98.51 0.257 0.253 0.2551 0.292 RANDOM 68.793
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.56 2.36 3.03 3.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.383 r_dihedral_angle_3_deg 11.071 r_dihedral_angle_4_deg 10.925 r_dihedral_angle_1_deg 2.24 r_angle_refined_deg 1.247 r_angle_other_deg 0.87 r_scangle_it 0.699 r_scbond_it 0.422 r_mcangle_it 0.364 r_mcbond_it 0.329
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.383 r_dihedral_angle_3_deg 11.071 r_dihedral_angle_4_deg 10.925 r_dihedral_angle_1_deg 2.24 r_angle_refined_deg 1.247 r_angle_other_deg 0.87 r_scangle_it 0.699 r_scbond_it 0.422 r_mcangle_it 0.364 r_mcbond_it 0.329 r_nbd_refined 0.201 r_symmetry_hbond_refined 0.197 r_nbd_other 0.18 r_symmetry_vdw_other 0.18 r_nbtor_refined 0.169 r_xyhbond_nbd_other 0.169 r_xyhbond_nbd_refined 0.13 r_symmetry_vdw_refined 0.128 r_nbtor_other 0.08 r_chiral_restr 0.069 r_mcbond_other 0.031 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13868 Nucleic Acid Atoms Solvent Atoms 4 Heterogen Atoms 114
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHARP phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection HKL-2000 data reduction