☰ Navigation Tabs
Crystal structure of genomically encoded fosfomycin resistance protein, FosX, from Listeria monocytogenes (hexagonal form)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1R9C PDB ENTRY 1R9C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 295 15% PEG 8000, 20 mM Na acetate, 0.1 M Na citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.7 66.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.524 α = 90 b = 83.524 β = 90 c = 114.446 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm mirrors 2002-01-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CAMD BEAMLINE GCPCC 1.069 CAMD GCPCC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 30 99.4 0.099 6.83 4.5 6831 6831 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.42 99.9 0.44 1.3 4.9 666
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1R9C 3.3 15 5815 5815 293 90.19 0.23 0.23 0.228 0.277 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.51 1.26 2.51 -3.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.279 r_dihedral_angle_4_deg 22.27 r_dihedral_angle_3_deg 20.328 r_dihedral_angle_1_deg 6.819 r_angle_refined_deg 1.244 r_scangle_it 1.183 r_scbond_it 0.684 r_mcangle_it 0.51 r_nbtor_refined 0.327 r_mcbond_it 0.272
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.279 r_dihedral_angle_4_deg 22.27 r_dihedral_angle_3_deg 20.328 r_dihedral_angle_1_deg 6.819 r_angle_refined_deg 1.244 r_scangle_it 1.183 r_scbond_it 0.684 r_mcangle_it 0.51 r_nbtor_refined 0.327 r_mcbond_it 0.272 r_nbd_refined 0.236 r_symmetry_vdw_refined 0.199 r_xyhbond_nbd_refined 0.135 r_chiral_restr 0.073 r_bond_refined_d 0.011 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1904 Nucleic Acid Atoms Solvent Atoms 6 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement MAR345dtb data collection HKL-2000 data reduction HKL-2000 data scaling AMoRE phasing