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Structural basis for a novel interaction between AIP4 and beta-PIX
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2AK5 PDB Entry 2AK5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.1 M TrisHCl, 0.2 M ammonium sulfate, 32-38% (w/v) PEG-MME 5000, pH 7.1-7.9, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.99 38.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.747 α = 90 b = 41.747 β = 90 c = 149.278 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 IMAGE PLATE RIGAKU RAXIS IV mirrors 2006-05-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 36.15 96.3 0.083 36.7 14 5612 5610 1 1 19.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 94.2 18.7 17.2 14.1 519
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB Entry 2AK5 2.001 20.87 5610 5603 254 97.29 0.218 0.217 0.2102 0.246 0.2484 RANDOM 15.481
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.93 r_dihedral_angle_4_deg 12.761 r_dihedral_angle_3_deg 11.391 r_dihedral_angle_1_deg 4.978 r_scangle_it 1.897 r_scbond_it 1.098 r_angle_refined_deg 1.026 r_mcangle_it 0.853 r_mcbond_it 0.505 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.93 r_dihedral_angle_4_deg 12.761 r_dihedral_angle_3_deg 11.391 r_dihedral_angle_1_deg 4.978 r_scangle_it 1.897 r_scbond_it 1.098 r_angle_refined_deg 1.026 r_mcangle_it 0.853 r_mcbond_it 0.505 r_nbtor_refined 0.303 r_nbd_refined 0.173 r_symmetry_vdw_refined 0.167 r_symmetry_hbond_refined 0.135 r_xyhbond_nbd_refined 0.11 r_chiral_restr 0.07 r_bond_refined_d 0.006 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 574 Nucleic Acid Atoms Solvent Atoms 69 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling PHASER phasing