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Acetyl-CoA Synthetase, R584E mutation
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1PG4 pdb entry 1PG4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 287 6-15% PEG 8000, 9-13% ethylene glycol, 50 mM BTP, 1 mM CoA, 1 mM Propyl-AMP, 1 mM TCEP, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 287K
Crystal Properties Matthews coefficient Solvent content 2.5 50.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.05 α = 90 b = 95.532 β = 90 c = 164.25 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 CCD ADSC QUANTUM 210 2005-07-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE F2 0.97930 CHESS F2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 93.4 0.106 8 3.1 55167
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 82.9 0.37 2.4 4827
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1PG4 2.42 35 52215 2655 94.18 0.188 0.184 0.1901 0.245 0.251 RANDOM 25.887
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 -0.67 0.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.862 r_dihedral_angle_4_deg 21.17 r_dihedral_angle_3_deg 16.018 r_dihedral_angle_1_deg 6.508 r_scangle_it 2.556 r_scbond_it 1.594 r_angle_refined_deg 1.408 r_mcangle_it 0.973 r_mcbond_it 0.566 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.862 r_dihedral_angle_4_deg 21.17 r_dihedral_angle_3_deg 16.018 r_dihedral_angle_1_deg 6.508 r_scangle_it 2.556 r_scbond_it 1.594 r_angle_refined_deg 1.408 r_mcangle_it 0.973 r_mcbond_it 0.566 r_nbtor_refined 0.304 r_nbd_refined 0.202 r_symmetry_vdw_refined 0.194 r_xyhbond_nbd_refined 0.138 r_chiral_restr 0.091 r_symmetry_hbond_refined 0.082 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9838 Nucleic Acid Atoms Solvent Atoms 241 Heterogen Atoms 52
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction CHESS data collection HKL-2000 data reduction