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Putative prevent-host-death protein from Nitrosomonas europaea
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 291 0.2 M Ammonium sulfate, 25% PEG 3350, 0.1 M Hepes buffer, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.86 33.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.146 α = 90 b = 78.873 β = 115.96 c = 54.987 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-12-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97900 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 37.1 96.4 0.046 40.9 6.9 56074 56074 20.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.43 62.7 0.377 2.03 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.4 37.1 56060 53222 2838 96.34 0.13487 0.13386 0.1318 0.15379 0.1535 RANDOM 18.243
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.4 0.02 0.03 -0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.389 r_dihedral_angle_4_deg 16.121 r_dihedral_angle_3_deg 11.91 r_sphericity_free 7.048 r_dihedral_angle_1_deg 5.322 r_scangle_it 4.845 r_sphericity_bonded 4.829 r_scbond_it 3.452 r_mcangle_it 2.535 r_rigid_bond_restr 2.168
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.389 r_dihedral_angle_4_deg 16.121 r_dihedral_angle_3_deg 11.91 r_sphericity_free 7.048 r_dihedral_angle_1_deg 5.322 r_scangle_it 4.845 r_sphericity_bonded 4.829 r_scbond_it 3.452 r_mcangle_it 2.535 r_rigid_bond_restr 2.168 r_mcbond_it 1.792 r_angle_refined_deg 1.616 r_symmetry_vdw_refined 0.455 r_nbtor_refined 0.315 r_symmetry_hbond_refined 0.256 r_nbd_refined 0.227 r_xyhbond_nbd_refined 0.186 r_chiral_restr 0.121 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1606 Nucleic Acid Atoms Solvent Atoms 312 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling SHELXD phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing HKL-3000 phasing