Annotations: 2ODK

Putative prevent-host-death protein from Nitrosomonas europaea

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d2odkc_	Alpha and beta proteins (a+b)	YefM-like	YefM-like	YefM-like	Hypothetical protein NE2111	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
D	d2odkd2	Alpha and beta proteins (a+b)	YefM-like	YefM-like	YefM-like	Hypothetical protein NE2111	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
D	d2odkd3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
B	d2odkb_	Alpha and beta proteins (a+b)	YefM-like	YefM-like	YefM-like	Hypothetical protein NE2111	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
A	d2odka1	Alpha and beta proteins (a+b)	YefM-like	YefM-like	YefM-like	Hypothetical protein NE2111	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	YefM-like	8043402	3000907	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	YefM-like	8043402	3000907	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	YefM-like	8043402	3000907	SCOP2B (2022-06-29)
A	SCOP2 Family	YefM-like	8031024	4003460	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YefM-like	8043402	3000907	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	CBAH	e2odkC1	A: beta barrels	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: CBAH	ECOD (v294.2)
D	CBAH	e2odkD1	A: beta barrels	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: CBAH	ECOD (v294.2)
B	PhdYeFM_antitox	e2odkB1	A: few secondary structure elements	X: YefM-like	H: YefM-like	T: YefM-like	F: PhdYeFM_antitox	ECOD (v294.2)
A	PhdYeFM_antitox	e2odkA1	A: few secondary structure elements	X: YefM-like	H: YefM-like	T: YefM-like	F: PhdYeFM_antitox	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.40.1620.10	Alpha Beta	3-Layer(aba) Sandwich	YefM-like fold	YefM-like domain	CATH (4.3.0)
D	3.40.1620.10	Alpha Beta	3-Layer(aba) Sandwich	YefM-like fold	YefM-like domain	CATH (4.3.0)
B	3.40.1620.10	Alpha Beta	3-Layer(aba) Sandwich	YefM-like fold	YefM-like domain	CATH (4.3.0)
A	3.40.1620.10	Alpha Beta	3-Layer(aba) Sandwich	YefM-like fold	YefM-like domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system (PhdYeFM_antitox)	Antitoxin Phd_YefM, type II toxin-antitoxin system	Members of this family act as antitoxins in type II toxin-antitoxin systems [1]. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin [2] ...	Members of this family act as antitoxins in type II toxin-antitoxin systems [1]. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin [2]. This domain complexes with Txe toxins containing Pfam:PF06769, Fic/DOC toxins containing Pfam:PF02661 and YafO toxins containing Pfam:PF13957.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR006442	Type II toxin-antitoxin system, antitoxin Phd/YefM	Family
A, B, C, D	IPR036165	YefM-like superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.