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Crystal Structure of the Rat Androgen Receptor Ligand Binding Domain Complex with BMS-564929
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1I37
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 0.88M NA TARTRATE, 0.1M NA HEPES, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.34 42.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.64 α = 90 b = 65.62 β = 90 c = 70.83 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ "BLUE" CONFOCAL 2002-04-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 25 99.4 0.146 13 6.6 5527
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3 3.11 98.5 0.456 3.4 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MR THROUGHOUT 1I37 3 18.2 5481 304 99.8 0.249 0.2181 0.293 0.2616 RANDOM 26.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 21.8 -10.31 -11.48
RMS Deviations Key Refinement Restraint Deviation o_dihedral_angle_d 20.5 o_scangle_it 2.86 o_mcangle_it 2.27 o_scbond_it 1.81 o_angle_deg 1.4 o_mcbond_it 1.29 o_improper_angle_d 1.05 o_bond_d 0.009 o_bond_d_na o_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation o_dihedral_angle_d 20.5 o_scangle_it 2.86 o_mcangle_it 2.27 o_scbond_it 1.81 o_angle_deg 1.4 o_mcbond_it 1.29 o_improper_angle_d 1.05 o_bond_d 0.009 o_bond_d_na o_bond_d_prot o_angle_d o_angle_d_na o_angle_d_prot o_angle_deg_na o_angle_deg_prot o_dihedral_angle_d_na o_dihedral_angle_d_prot o_improper_angle_d_na o_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2002 Nucleic Acid Atoms Solvent Atoms 8 Heterogen Atoms 21
Software Software Software Name Purpose AMoRE phasing DENZO data reduction SCALEPACK data scaling CNS refinement