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Structures of and interactions between domains of trigger factor from Themotoga maritima
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 293 15% PEG 4000, 0.2M potassium chloride, 0.1M MES, VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 6.50
Crystal Properties Matthews coefficient Solvent content 2.32 46.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.214 α = 90 b = 75.871 β = 90 c = 30.514 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-10-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 20 99.4 0.042 34.2 6.2 6440
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.28 99.2 0.276 7.756 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 19.62 6404 297 100 0.195 0.1938 0.26 0.2625 RANDOM 29.98
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.53 0.39 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.705 r_dihedral_angle_4_deg 24.532 r_dihedral_angle_3_deg 12.803 r_dihedral_angle_1_deg 4.561 r_scangle_it 3.32 r_scbond_it 2.094 r_mcangle_it 1.29 r_angle_refined_deg 1.164 r_mcbond_it 0.838 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.705 r_dihedral_angle_4_deg 24.532 r_dihedral_angle_3_deg 12.803 r_dihedral_angle_1_deg 4.561 r_scangle_it 3.32 r_scbond_it 2.094 r_mcangle_it 1.29 r_angle_refined_deg 1.164 r_mcbond_it 0.838 r_nbtor_refined 0.303 r_nbd_refined 0.217 r_symmetry_vdw_refined 0.182 r_xyhbond_nbd_refined 0.17 r_symmetry_hbond_refined 0.158 r_chiral_restr 0.073 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 898 Nucleic Acid Atoms Solvent Atoms 138 Heterogen Atoms
Software Software Software Name Purpose PHASER phasing DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction