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Solution structure of the C-terminally encoded peptide of the plant parasitic nematode Meloidogyne hapla - CEP11
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 4 mg/mL protein, 10 uM DSS 90% H2O/10% D2O 0 7.0 ambient 298 2 2D 1H-13C HSQC 4 mg/mL protein, 10 uM DSS 90% H2O/10% D2O 0 7.0 ambient 298 3 2D 1H-1H TOCSY 4 mg/mL protein, 10 uM DSS 90% H2O/10% D2O 0 7.0 ambient 298 4 2D 1H-1H NOESY 4 mg/mL protein, 10 uM DSS 90% H2O/10% D2O 0 7.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 700
NMR Refinement Method Details Software simulated annealing NMRPipe
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 10 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Additional NMR Experimental Information Details NOESY collected at 50 and 300 ms ; TOCSY collected at 30 and 80 ms
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 chemical shift assignment NMRView Johnson, One Moon Scientific 3 peak picking NMRView Johnson, One Moon Scientific 4 data analysis NMRView Johnson, One Moon Scientific 5 structure solution ARIA Linge, O'Donoghue and Nilges 6 refinement ARIA Linge, O'Donoghue and Nilges