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NMR structure of a LINE-1 type transposase domain-containing protein 1 (L1TD1) from Homo sapiens
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.2 mM [U-98% 13C; U-98% 15N] protein, 5 mM sodium azide, 50 mM sodium chloride, 25 mM sodium phosphate 95% H2O/5% D2O 0.185 6.0 ambient 298 2 3D 1H-15N NOESY 1.2 mM [U-98% 13C; U-98% 15N] protein, 5 mM sodium azide, 50 mM sodium chloride, 25 mM sodium phosphate 95% H2O/5% D2O 0.185 6.0 ambient 298 3 3D 1H-13C NOESY aliphatic 1.2 mM [U-98% 13C; U-98% 15N] protein, 5 mM sodium azide, 50 mM sodium chloride, 25 mM sodium phosphate 95% H2O/5% D2O 0.185 6.0 ambient 298 4 3D 1H-13C NOESY aromatic 1.2 mM [U-98% 13C; U-98% 15N] protein, 5 mM sodium azide, 50 mM sodium chloride, 25 mM sodium phosphate 95% H2O/5% D2O 0.185 6.0 ambient 298 5 APSY 5D-HACACONH 1.2 mM [U-98% 13C; U-98% 15N] protein, 5 mM sodium azide, 50 mM sodium chloride, 25 mM sodium phosphate 95% H2O/5% D2O 0.185 6.0 ambient 298 6 APSY 5D-CBCACONH 1.2 mM [U-98% 13C; U-98% 15N] protein, 5 mM sodium azide, 50 mM sodium chloride, 25 mM sodium phosphate 95% H2O/5% D2O 0.185 6.0 ambient 298 7 ASPY 4D-HACANH 1.2 mM [U-98% 13C; U-98% 15N] protein, 5 mM sodium azide, 50 mM sodium chloride, 25 mM sodium phosphate 95% H2O/5% D2O 0.185 6.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 800
NMR Refinement Method Details Software simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 80 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS Brunger A. T. et.al. 2 structure solution CYANA Guntert, Mumenthaler and Wuthrich 3 processing TopSpin Bruker Biospin 4 collection TopSpin Bruker Biospin 5 chemical shift assignment UNIO UNIO Herrmann and Wuthrich 6 structure solution UNIO UNIO Herrmann and Wuthrich 7 chemical shift assignment CARA Keller and Wuthrich 8 data analysis CARA Keller and Wuthrich