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Dimeric structure of transmembrane domain of amyloid precursor protein in micellar environment
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.9 mM [U-100% 15N] APPjmtm, 36 mM DPC 95% H2O/5% D2O 20 6.2 ambient 318 2 3D 1H-15N NOESY 0.9 mM [U-100% 15N] APPjmtm, 36 mM DPC 95% H2O/5% D2O 20 6.2 ambient 318 3 2D 1H-15N HSQC 0.75 mM [U-100% 13C; U-100% 15N] APPjmtm, 0.75 mM APPjmtm, 60 mM [U-98% 2H] DPC 100% D2O 20 6.2 ambient 318 4 3D HNCO 0.75 mM [U-100% 13C; U-100% 15N] APPjmtm, 0.75 mM APPjmtm, 60 mM [U-98% 2H] DPC 100% D2O 20 6.2 ambient 318 5 3D HN(CO)CA 0.75 mM [U-100% 13C; U-100% 15N] APPjmtm, 0.75 mM APPjmtm, 60 mM [U-98% 2H] DPC 100% D2O 20 6.2 ambient 318 6 3D 1H-13C NOESY aliphatic 0.75 mM [U-100% 13C; U-100% 15N] APPjmtm, 0.75 mM APPjmtm, 60 mM [U-98% 2H] DPC 100% D2O 20 6.2 ambient 318 7 3D HNCA 0.75 mM [U-100% 13C; U-100% 15N] APPjmtm, 0.75 mM APPjmtm, 60 mM [U-98% 2H] DPC 100% D2O 20 6.2 ambient 318 8 3D HCCH-TOCSY 0.75 mM [U-100% 13C; U-100% 15N] APPjmtm, 0.75 mM APPjmtm, 60 mM [U-98% 2H] DPC 100% D2O 20 6.2 ambient 318 9 3D 15N,13C-F1-filtered/F3-edited NOESY 0.75 mM [U-100% 13C; U-100% 15N] APPjmtm, 0.75 mM APPjmtm, 60 mM [U-98% 2H] DPC 100% D2O 20 6.2 ambient 318 10 2D 1H-13C HSQC 0.75 mM [U-100% 13C; U-100% 15N] APPjmtm, 0.75 mM APPjmtm, 60 mM [U-98% 2H] DPC 100% D2O 20 6.2 ambient 318
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 600 2 Bruker AVANCE III 800
NMR Refinement Method Details Software simulated annealing CARA
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 12 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 peak picking CARA 1.8.4 Keller,Bettendorff,Damberger 2 chemical shift assignment CARA 1.8.4 Keller,Bettendorff,Damberger 3 peak integration CARA 1.8.4 Keller,Bettendorff,Damberger 4 collection TopSpin Bruker Biospin 5 processing TopSpin Bruker Biospin 6 data analysis TopSpin Bruker Biospin 7 structure solution CYANA 3.0 Peter Guentert 8 processing CYANA 3.0 Peter Guentert 9 geometry optimization MOLMOL Koradi, Billeter and Wuthrich 10 visualization MOLMOL Koradi, Billeter and Wuthrich 11 dihedral angles prediction TALOS Cornilescu, Delaglio and Bax 12 refinement CYANA Peter Guentert