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The structure of bluetongue virus VP4 reveals a multifunctional RNA- capping production-line
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.7 100 MM IMIDAZOLE PH 8.0, 2%-8% PROPAN-2-OL, 0-250 MM NACL, 50 MM DTT
Crystal Properties Matthews coefficient Solvent content 2.27 45.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.4 α = 90 b = 75.4 β = 90 c = 422.47 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2004-10-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.4 25 99.6 0.18 13.7 8.6 10116 1.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.4 3.52 97.6 0.58 1.4 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 3.4 25 10116 516 99.6 0.245 0.24 0.2323 0.331 0.3162 RANDOM 88.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.32 2.16 4.32 -6.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.889 r_dihedral_angle_3_deg 23.897 r_dihedral_angle_4_deg 18.942 r_dihedral_angle_1_deg 8.959 r_angle_refined_deg 1.901 r_scangle_it 1.665 r_scbond_it 1.017 r_mcangle_it 0.814 r_mcbond_it 0.47 r_nbtor_refined 0.331
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.889 r_dihedral_angle_3_deg 23.897 r_dihedral_angle_4_deg 18.942 r_dihedral_angle_1_deg 8.959 r_angle_refined_deg 1.901 r_scangle_it 1.665 r_scbond_it 1.017 r_mcangle_it 0.814 r_mcbond_it 0.47 r_nbtor_refined 0.331 r_nbd_refined 0.288 r_symmetry_vdw_refined 0.232 r_xyhbond_nbd_refined 0.201 r_symmetry_hbond_refined 0.185 r_chiral_restr 0.143 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5040 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 73
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling