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Crystal structure of Toxoplasma gondii micronemal protein 1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.6 VAPOUR DIFFUSION, HANGING DROP 3.6 M AMMONIUM ACETATE, 100 MM BIS-TRIS-PROPANE PH 7.6
Crystal Properties Matthews coefficient Solvent content 3.48 64.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.192 α = 90 b = 66.192 β = 90 c = 172.299 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH COLLIMATOR, MIRRORS 2006-02-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX10.1 SRS PX10.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 18 96.6 0.08 19.2 5.1 30153 -3.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 76.2 0.31 3.4 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 17.49 28518 1525 96.7 0.179 0.178 0.1763 0.205 0.2036 RANDOM 27.77
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.907 r_dihedral_angle_3_deg 13.606 r_dihedral_angle_4_deg 12.27 r_dihedral_angle_1_deg 6.653 r_scangle_it 4.444 r_scbond_it 2.875 r_mcangle_it 1.735 r_angle_refined_deg 1.622 r_mcbond_it 1.099 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.907 r_dihedral_angle_3_deg 13.606 r_dihedral_angle_4_deg 12.27 r_dihedral_angle_1_deg 6.653 r_scangle_it 4.444 r_scbond_it 2.875 r_mcangle_it 1.735 r_angle_refined_deg 1.622 r_mcbond_it 1.099 r_nbtor_refined 0.299 r_symmetry_vdw_refined 0.219 r_nbd_refined 0.203 r_symmetry_hbond_refined 0.19 r_xyhbond_nbd_refined 0.166 r_chiral_restr 0.116 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1787 Nucleic Acid Atoms Solvent Atoms 181 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing