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Canine adenovirus fibre head at 1.5 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QHV PDB ENTRY 1QHV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.15 M KBR, 30% PEG MONOMETHYL-ETHER 2000
Crystal Properties Matthews coefficient Solvent content 2.2 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.834 α = 90 b = 88.547 β = 96.4 c = 106.913 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 28.4 95.1 0.1 15.3 4.1 156532 8.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.54 89.4 0.15 7.8 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1QHV 1.5 106 153376 3156 94.8 0.165 0.165 0.1727 0.206 0.1713 RANDOM 6.01
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.45 0.04 0.11 -0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.719 r_dihedral_angle_3_deg 11.034 r_dihedral_angle_4_deg 9.827 r_dihedral_angle_1_deg 7.021 r_scangle_it 3.122 r_scbond_it 2.315 r_mcangle_it 1.538 r_angle_refined_deg 1.423 r_mcbond_it 1.283 r_angle_other_deg 0.902
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.719 r_dihedral_angle_3_deg 11.034 r_dihedral_angle_4_deg 9.827 r_dihedral_angle_1_deg 7.021 r_scangle_it 3.122 r_scbond_it 2.315 r_mcangle_it 1.538 r_angle_refined_deg 1.423 r_mcbond_it 1.283 r_angle_other_deg 0.902 r_mcbond_other 0.396 r_symmetry_vdw_other 0.318 r_nbd_refined 0.219 r_nbd_other 0.204 r_symmetry_hbond_refined 0.192 r_nbtor_refined 0.174 r_xyhbond_nbd_refined 0.164 r_symmetry_vdw_refined 0.161 r_chiral_restr 0.087 r_nbtor_other 0.083 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8436 Nucleic Acid Atoms Solvent Atoms 1539 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing