☰ Navigation Tabs
CRYSTAL STRUCTURE OF BASILLUS SUBTILIS FAMILY II INORGANIC PYROPHOSPHATASE MUTANT, H98Q, IN COMPLEX WITH PNP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WPM PDB ENTRY 1WPM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 100MM HEPES/K (PH 7.5) 2.3-2.5M AMMONIUM SULPHATE 3-4% PEG 400
Crystal Properties Matthews coefficient Solvent content 3.78 67.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.908 α = 90 b = 115.249 β = 90 c = 148.06 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV IMAGE PLATE MIRRORS 2003-05-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 30 98.9 0.09 15 3.7 50598 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.19 97.9 0.4 3.3 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1WPM 2.15 30 50598 2554 94.2 0.17 0.169 0.1709 0.205 0.2058 RANDOM 33.79
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.39 0.69 -0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.729 r_dihedral_angle_3_deg 15.922 r_dihedral_angle_4_deg 12.034 r_dihedral_angle_1_deg 5.976 r_scangle_it 3.458 r_scbond_it 2.159 r_angle_refined_deg 1.472 r_mcangle_it 1.161 r_mcbond_it 0.711 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.729 r_dihedral_angle_3_deg 15.922 r_dihedral_angle_4_deg 12.034 r_dihedral_angle_1_deg 5.976 r_scangle_it 3.458 r_scbond_it 2.159 r_angle_refined_deg 1.472 r_mcangle_it 1.161 r_mcbond_it 0.711 r_nbtor_refined 0.311 r_nbd_refined 0.175 r_xyhbond_nbd_refined 0.128 r_symmetry_vdw_refined 0.122 r_symmetry_hbond_refined 0.111 r_chiral_restr 0.096 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4744 Nucleic Acid Atoms Solvent Atoms 486 Heterogen Atoms 77
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CNS phasing