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Structure of the C-terminal head domain of the avian adenovirus CELO long fibre (P21 crystal form)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2IUM PDB ENTRY 2IUM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 2.0 M AMMONIUMDIHYDROGENPHOSPHATE; 0.1 M TRIS-HCL PH 8.5
Crystal Properties Matthews coefficient Solvent content 2.55 51.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.96 α = 90 b = 107.864 β = 93.63 c = 114.833 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 285 CCD BRUKER-NONIUS OSMIC CONFOCAL MIRRORS (MULTI-LAYER) 2006-05-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 49.6 99.5 0.08 18.3 5.4 33536
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 95.7 0.2 7.3 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2IUM 2.8 28 31934 1554 99.6 0.155 0.153 0.194 0.1765 SHELLS 18.14
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.6 0.53 1.12 -0.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.682 r_dihedral_angle_4_deg 20.698 r_dihedral_angle_3_deg 15.953 r_dihedral_angle_1_deg 6.447 r_scangle_it 3.538 r_mcangle_it 2.173 r_scbond_it 2.149 r_angle_refined_deg 1.464 r_mcbond_it 1.186 r_nbtor_refined 0.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.682 r_dihedral_angle_4_deg 20.698 r_dihedral_angle_3_deg 15.953 r_dihedral_angle_1_deg 6.447 r_scangle_it 3.538 r_mcangle_it 2.173 r_scbond_it 2.149 r_angle_refined_deg 1.464 r_mcbond_it 1.186 r_nbtor_refined 0.314 r_symmetry_hbond_refined 0.306 r_symmetry_vdw_refined 0.237 r_nbd_refined 0.214 r_xyhbond_nbd_refined 0.142 r_chiral_restr 0.09 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9594 Nucleic Acid Atoms Solvent Atoms 112 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling AMoRE phasing