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Crystal structure of eIF5 C-terminal domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 293 0.2 M MGCL2, 0.1 M TRIS PH 8.5, 25% PEG 3350, 20 DEG C
Crystal Properties Matthews coefficient Solvent content 1.89 34.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.137 α = 90 b = 70.254 β = 90 c = 81.705 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2004-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 98.4 0.06 27.6 5.9 104040
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.91 97.4 0.08 8.5 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 30 16243 1287 100 0.188 0.185 0.221 RANDOM 20.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.42 -0.1 0.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.004 r_dihedral_angle_4_deg 22.588 r_dihedral_angle_3_deg 15.449 r_dihedral_angle_1_deg 5.407 r_scangle_it 3.705 r_scbond_it 2.309 r_mcangle_it 1.539 r_angle_refined_deg 1.18 r_mcbond_it 1.175 r_nbtor_refined 0.318
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.004 r_dihedral_angle_4_deg 22.588 r_dihedral_angle_3_deg 15.449 r_dihedral_angle_1_deg 5.407 r_scangle_it 3.705 r_scbond_it 2.309 r_mcangle_it 1.539 r_angle_refined_deg 1.18 r_mcbond_it 1.175 r_nbtor_refined 0.318 r_nbd_refined 0.228 r_xyhbond_nbd_refined 0.199 r_symmetry_vdw_refined 0.192 r_symmetry_hbond_refined 0.138 r_chiral_restr 0.09 r_bond_refined_d 0.008 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1473 Nucleic Acid Atoms Solvent Atoms 139 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling SHARP phasing