2INN

Structure of the Phenol Hydroxyalse-Regulatory Protein Complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7297100 mM Tris, pH 7.0, 150 mM Na2MoO4, 5% glycerol, and 17-20% PEG 8000 (w/w), VAPOR DIFFUSION, HANGING DROP, temperature 297K
Crystal Properties
Matthews coefficientSolvent content
2.5651.89

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 87.453α = 90
b = 146.925β = 90
c = 189.787γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152004-05-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-10.979SSRLBL9-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.730850.0590.05917.35.4680872223
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.72.8540.260.2654.32565

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.7306808758555297386.270.2130.2060.2020.252RANDOM35.988
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.5-0.76-0.73
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.646
r_dihedral_angle_4_deg22.984
r_dihedral_angle_3_deg22.042
r_dihedral_angle_1_deg7.992
r_scangle_it5.1
r_scbond_it3.541
r_angle_refined_deg2.629
r_mcangle_it2.098
r_mcbond_it1.522
r_nbtor_refined0.343
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.646
r_dihedral_angle_4_deg22.984
r_dihedral_angle_3_deg22.042
r_dihedral_angle_1_deg7.992
r_scangle_it5.1
r_scbond_it3.541
r_angle_refined_deg2.629
r_mcangle_it2.098
r_mcbond_it1.522
r_nbtor_refined0.343
r_nbd_refined0.291
r_symmetry_vdw_refined0.271
r_xyhbond_nbd_refined0.186
r_chiral_restr0.17
r_metal_ion_refined0.163
r_symmetry_hbond_refined0.039
r_bond_refined_d0.033
r_gen_planes_refined0.01
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms16074
Nucleic Acid Atoms
Solvent Atoms304
Heterogen Atoms11

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
ADSCdata collection
DENZOdata reduction
SCALEPACKdata scaling
SnBphasing