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Crystal structure of MOA, a lectin from the mushroom Marasmius oreades in complex with the trisaccharide Gal(1,3)Gal(1,4)GlcNAc
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 0.1M Hepes, 2.4 M ammonium formate, 0.6 mg/ml N-ethylmaleimide, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 5.505585 77.65905
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.64 α = 90 b = 104.64 β = 90 c = 112.66 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-04-19 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.97905, 0.93952 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 70 100 0.1 0.11 18 11 36670 2 2 43
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.3 100 0.81 0.39 2.9 11 5263
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.41 19.8 2 2 26661 26661 1413 99.59 0.19152 0.19048 0.1869 0.21126 0.2053 RANDOM 35.82
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.22 0.11 0.22 -0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.02 r_dihedral_angle_4_deg 19.694 r_dihedral_angle_3_deg 14.773 r_dihedral_angle_1_deg 8.613 r_scangle_it 3.639 r_scbond_it 2.382 r_angle_refined_deg 1.522 r_mcangle_it 1.418 r_mcbond_it 0.792 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.02 r_dihedral_angle_4_deg 19.694 r_dihedral_angle_3_deg 14.773 r_dihedral_angle_1_deg 8.613 r_scangle_it 3.639 r_scbond_it 2.382 r_angle_refined_deg 1.522 r_mcangle_it 1.418 r_mcbond_it 0.792 r_nbtor_refined 0.312 r_symmetry_vdw_refined 0.232 r_nbd_refined 0.209 r_symmetry_hbond_refined 0.194 r_xyhbond_nbd_refined 0.174 r_chiral_restr 0.108 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2277 Nucleic Acid Atoms Solvent Atoms 170 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement ProDC data collection SHELXS phasing