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Crystal Structure of the Lingo-1 Ectodomain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 291 1.4 M Am Sulfate, O.1 M Sodium Citrate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 291.0K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 201.517 α = 90 b = 149.72 β = 90 c = 157.486 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD ADSC QUANTUM 4 2005-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.698 158.11 98.9 0.09 61 8 122982 122982 54
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.698 2.8 94.7 0.61 1.3 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.698 158.11 129519 122982 6536 98.67 0.216 0.216 0.214 0.255 RANDOM 78.945
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.45 6.26 -1.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.092 r_dihedral_angle_4_deg 18.813 r_dihedral_angle_3_deg 16.12 r_dihedral_angle_1_deg 6.112 r_scangle_it 2.002 r_angle_refined_deg 1.301 r_scbond_it 1.168 r_mcangle_it 0.736 r_mcbond_it 0.418 r_nbtor_refined 0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.092 r_dihedral_angle_4_deg 18.813 r_dihedral_angle_3_deg 16.12 r_dihedral_angle_1_deg 6.112 r_scangle_it 2.002 r_angle_refined_deg 1.301 r_scbond_it 1.168 r_mcangle_it 0.736 r_mcbond_it 0.418 r_nbtor_refined 0.32 r_nbd_refined 0.199 r_symmetry_hbond_refined 0.185 r_symmetry_vdw_refined 0.178 r_xyhbond_nbd_refined 0.13 r_chiral_restr 0.078 r_bond_refined_d 0.009 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15122 Nucleic Acid Atoms Solvent Atoms 308 Heterogen Atoms 689
Software Software Software Name Purpose ADSC data collection SHARP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling