2I0T

Crystal structure of phenylacetaldehyde derived R-carbinolamine adduct of aromatic amine dehydrogenase


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6295PEG 2000 mme, ammonium sulphate, sodium cocadylate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.3447.35

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 70.524α = 90
b = 88.451β = 90.45
c = 80.164γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152006-07-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID290.9ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.3515990.08410.2215552
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.351.42980.3283.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1.35152125212125211067298.80.1530.1520.175RANDOM11.825
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.19-0.63-0.310.5
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.838
r_dihedral_angle_4_deg11.944
r_dihedral_angle_3_deg11.318
r_dihedral_angle_1_deg7.156
r_scangle_it2.958
r_scbond_it1.907
r_angle_refined_deg1.412
r_mcangle_it1.299
r_angle_other_deg0.81
r_mcbond_it0.81
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.838
r_dihedral_angle_4_deg11.944
r_dihedral_angle_3_deg11.318
r_dihedral_angle_1_deg7.156
r_scangle_it2.958
r_scbond_it1.907
r_angle_refined_deg1.412
r_mcangle_it1.299
r_angle_other_deg0.81
r_mcbond_it0.81
r_symmetry_vdw_refined0.281
r_symmetry_vdw_other0.213
r_mcbond_other0.209
r_nbd_refined0.199
r_nbd_other0.193
r_nbtor_refined0.179
r_symmetry_hbond_refined0.17
r_xyhbond_nbd_refined0.147
r_nbtor_other0.097
r_chiral_restr0.089
r_xyhbond_nbd_other0.078
r_bond_refined_d0.012
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7484
Nucleic Acid Atoms
Solvent Atoms1468
Heterogen Atoms18

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
MOSFLMdata reduction
CCP4data scaling