☰ Navigation Tabs
ATP dependent DNA ligase from S. solfataricus bound to ATP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 298 6-8% PEG 3350, 50 mM sodium acetate pH 4.5, 30-80 mM sodium/potassium tartrate, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.97 58.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.324 α = 90 b = 171.65 β = 90 c = 78.686 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 12.3.1 ALS 12.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.86 50 96.4 0.077 14.4 3.9 18026 18026
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.86 3 84.5 0.349 3.2 1570
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.87 20 17962 17962 916 94.98 0.221 0.217 0.217 0.2039 0.279 0.2554 RANDOM 49.765
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.99 -2.33 4.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.939 r_dihedral_angle_4_deg 21.789 r_dihedral_angle_3_deg 19.69 r_dihedral_angle_1_deg 5.638 r_scangle_it 1.769 r_angle_refined_deg 1.338 r_scbond_it 1.054 r_mcangle_it 0.747 r_mcbond_it 0.414 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.939 r_dihedral_angle_4_deg 21.789 r_dihedral_angle_3_deg 19.69 r_dihedral_angle_1_deg 5.638 r_scangle_it 1.769 r_angle_refined_deg 1.338 r_scbond_it 1.054 r_mcangle_it 0.747 r_mcbond_it 0.414 r_nbtor_refined 0.308 r_nbd_refined 0.219 r_symmetry_hbond_refined 0.21 r_symmetry_vdw_refined 0.196 r_xyhbond_nbd_refined 0.159 r_chiral_restr 0.086 r_bond_refined_d 0.012 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4562 Nucleic Acid Atoms Solvent Atoms 4 Heterogen Atoms 31
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction