☰ Navigation Tabs
Catalytic and ubiqutin-associated domains of MARK1/PAR-1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ZMU PDB ENTRY 1ZMU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 10% PEG 3350, 0.2M ammonium citrate, 0.1M bis-Tris, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.05 59.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.682 α = 90 b = 116.47 β = 90 c = 285.748 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2005-10-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 0.803 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 99.4 0.082 15.4 4.8 112949 112949
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.6 2.64 98.5 0.473 2.6 4.5 5506
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1ZMU 2.6 10 110686 110686 2786 99.31 0.214 0.214 0.212 0.2134 0.29 0.2869 RANDOM 48.596
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.56 0.75 0.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.722 r_dihedral_angle_4_deg 22.14 r_dihedral_angle_3_deg 22.068 r_dihedral_angle_1_deg 8.067 r_scangle_it 4.911 r_scbond_it 3.283 r_angle_refined_deg 2.408 r_mcangle_it 2.189 r_mcbond_it 1.298 r_nbtor_refined 0.339
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.722 r_dihedral_angle_4_deg 22.14 r_dihedral_angle_3_deg 22.068 r_dihedral_angle_1_deg 8.067 r_scangle_it 4.911 r_scbond_it 3.283 r_angle_refined_deg 2.408 r_mcangle_it 2.189 r_mcbond_it 1.298 r_nbtor_refined 0.339 r_nbd_refined 0.269 r_symmetry_hbond_refined 0.264 r_symmetry_vdw_refined 0.235 r_xyhbond_nbd_refined 0.192 r_chiral_restr 0.16 r_bond_refined_d 0.028 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19369 Nucleic Acid Atoms Solvent Atoms 210 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction