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Structure of the MnmE G-domain in complex with GDP*AlF4-, Mg2+ and K+
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 16-19% PEG 3350, 100 mM MES pH 6.0, 200 mM MgCl2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.43 49.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.54 α = 90 b = 70.227 β = 95.51 c = 91.3 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARMOSAIC 225 mm CCD 2005-12-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.934 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 20 97.1 0.081 8.47 79655 25.53
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.8 0.312 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 20 79443 75468 3975 99.73 0.20766 0.20516 0.2043 0.25563 0.2555 RANDOM 21.696
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.79 0.21 1.27 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.614 r_dihedral_angle_4_deg 15.748 r_dihedral_angle_3_deg 15.611 r_dihedral_angle_1_deg 6.008 r_scangle_it 4.235 r_scbond_it 2.649 r_angle_refined_deg 1.568 r_mcangle_it 1.5 r_mcbond_it 0.847 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.614 r_dihedral_angle_4_deg 15.748 r_dihedral_angle_3_deg 15.611 r_dihedral_angle_1_deg 6.008 r_scangle_it 4.235 r_scbond_it 2.649 r_angle_refined_deg 1.568 r_mcangle_it 1.5 r_mcbond_it 0.847 r_nbtor_refined 0.299 r_nbd_refined 0.228 r_symmetry_vdw_refined 0.203 r_symmetry_hbond_refined 0.122 r_chiral_restr 0.12 r_xyhbond_nbd_refined 0.117 r_metal_ion_refined 0.104 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4966 Nucleic Acid Atoms Solvent Atoms 585 Heterogen Atoms 143
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction SHARP phasing